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Creators/Authors contains: "Hong, Yan"

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  1. Jeong, Jichai; Mongan, William M (Ed.)
    Cardiovascular disease is a leading cause of death worldwide. The differentiation of human pluripotent stem cells (hPSCs) into functional cardiomyocytes offers significant potential for disease modeling and cell-based cardiac therapies. However, hPSC-derived cardiomyocytes (hPSC-CMs) remain largely immature, limiting their experimental and clinical applications. A critical challenge in current in vitro culture systems is the absence of standardized metrics to quantify maturity. This study presents a data-driven pipeline to quantify hPSC-CM maturity using gene expression data across various stages of cardiac development. We determined that culture time serves as a feasible proxy for maturity. To improve prediction accuracy, machine learning algorithms were employed to identify heart-related genes whose expression strongly correlates with culture time. Our results reduced the average discrepancy between predicted and observed culture time to 4.461 days and CASQ2 (Calsequestrin 2), a gene involved in calcium ion storage and transport, was identified as the most critical cardiac gene associated with culture duration. This novel framework for maturity assessment moves beyond traditional qualitative methods, providing deeper insights into hPSC-CM maturation dynamics. It establishes a foundation for developing advanced lab-on-chip devices capable of real-time maturity monitoring and adaptive stimulus selection, paving the way for improved maturation strategies and broader experimental/clinical applications. 
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    Free, publicly-accessible full text available December 1, 2025
  2. ABSTRACT The radiance of sky brightness differs principally with wavelength passband. Atmospheric scattering of sunlight causes the radiation in the near-infrared band. The Antarctic is a singular area of the planet, marked by an unparalleled climate and geographical conditions, including the coldest temperatures and driest climate on Earth, which leads it to be the best candidate site for observing in infrared bands. At present, there are still no measurements of night-sky brightness at DOME A. We have developed the Near-Infrared Sky Brightness Monitor (NISBM) in the J, H, and Ks bands for measurements at DOME A. The instruments were installed at DOME A in 2019 and early results of NIR sky brightness from 2019 January–April have been obtained. The variation of sky background brightness with solar elevation and scanning angle is analysed. The zenith sky flux intensity for the early night at DOME A in the J band is in the 600–1100 μJy arcsec−2 range, that in the H band is between 1100 and 2600 μJy arcsec−2, and that in the Ks band is in the range ∼200–900 μJy arcsec−2. This result shows that the sky brightness in J and H bands is close to that of Ali in China and Mauna Kea in the USA. The sky brightness in the Ks band is much better than that in Ali, China and Mauna Kea, USA. This shows that, from our early results, DOME A is a good site for astronomical observation in the Ks band. 
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  3. Abstract Biological organisms experience constantly changing environments, from sudden changes in physiology brought about by feeding, to the regular rising and setting of the Sun, to ecological changes over evolutionary timescales. Living organisms have evolved to thrive in this changing world but the general principles by which organisms shape and are shaped by time varying environments remain elusive. Our understanding is particularly poor in the intermediate regime with no separation of timescales, where the environment changes on the same timescale as the physiological or evolutionary response. Experiments to systematically characterize the response to dynamic environments are challenging since such environments are inherently high dimensional. This roadmap deals with the unique role played by time varying environments in biological phenomena across scales, from physiology to evolution, seeking to emphasize the commonalities and the challenges faced in this emerging area of research. 
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